Publications

Featured Publications

Short-Term Safety and Effectiveness for Tenecteplase and Alteplase in Acute Ischemic Stroke

Rousseau JF, Weber JM, Alhanti B,Saver JL, Messe SR, Schwamm LH, Fonarow GC, Sheth KN,

Smith EE, Mullen MT, Silva GS, Mac Grory B, Xian Y, Warach SJ. 2025.03.

 

Methods for development and application of data standards in an ontology-driven information model for measuring, managing, and computing social determinants of health for individuals, households, and communities evaluated through an example of asthma
Rousseau JF, Oliveira E, Tierney WM, Khurshid A, 2022 Dec 136

 

AI-generated text may have a role in evidence-based medicine
Peng Y, Rousseau JF, Shortliffe EH, Weng C, 2023 Jul 29 1593-1594

 

Can emergency department provider notes help to achieve more dynamic clinical decision support?
Rousseau JF, Ip IK, Raja AS, Schuur JD, Khorasani R, 2020 Dec 1 1269-1277

 

Early identification of patients at risk for iron-deficiency anemia using deep learning techniques
Garduno-Rapp Nelly Estefanie, Yee Seng Ng, Jenny L Weon, Sameh N Saleh, Christoph U Lehmann, Chenlu Tian, Andrew Quinn. American Journal of Clinical Pathology, Volume 162, Issue 3, September 2024, Pages 243–251.

 

Application of an Externally Developed Algorithm to Identify Research Cases and Controls from Electronic Health Record Data: Failures and Successes.

Garduno Rapp, NE., Herzberg, SD., Ong, HH., Kao, C., Lehmann, CU., Gangireddy, S., Jain, NB., Giri, A., 2025. 

 

Standardizing Phenotypic Algorithms for the Classification of Degenerative Rotator Cuff Tear from Electronic Health Record Systems
Simone Herzberg, Nelly Estefanie Garduno-Rapp, Henry Ong, Srushti Gangireddy, Anoop Chandrashekar, Wei-Qi Wei, Lance LeClere, Wanqing Wen, Katherine Hartmann, Nitin Jain, Ayush Giri, 2024.09.29.

Other Publications

Creating a collaborative culture of learning within a network of community mental health early psychosis programs in Texas

Lopez MA, Reznik SJ, Klodnick VV, Cohen D, Myers N, Rousseau JF, Aksan N, de Oliveira E, Strakowski SM 2025 Feb Schizophrenia Research 276 1-7

IgM N-glycosylation correlates with COVID-19 severity and rate of complement deposition

Author Collaboration ID, Author Collaboration IS, Author Collaboration IC, Author Collaboration IC, Author Collaboration IN, Author Collaboration IS, Author Collaboration C&, Haslund-Gourley BS, Woloszczuk K, Hou J, Connors J, Cusimano G, Bell M, Taramangalam B, Fourati S, Mege N, Bernui M, Altman MC, Krammer F, van Bakel H, Maecker HT, Rouphael N, Diray-Arce J, Wigdah B, Kutzler MA, Cairns CB, Haddad EK, Comunale MA, Ozonoff A, Ehrlich LI, Melamed E, Sesma AF, Simon V, Pulendran B, Nadeau KC, Davis MM, McCoey GA, Sekaly R, Baden LR, Levy O, Schaenman J, Reed EF, Shaw AC, Hafler DA, Montgomery RR, Kleinstein SH, Becker PM, Augustine AD, Calfee CS, Erle DJ, Debakey ME, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Rousseau JF 2024 Dec Nature communications 15

Hidden flaws behind expert-level accuracy of multimodal GPT-4 vision in medicine

Jin Q, Chen F, Zhou Y, Xu Z, Cheung JM, Chen R, Summers RM, Rousseau JF, Ni P, Landsman MJ, Baxter SL, Al’Aref SJ, Li Y, Chen A, Brejt JA, Chiang MF, Peng Y, Lu Z 2024 Dec npj Digital Medicine 7

Beyond bias: Aggregate approaches to conflicts of interest research and policy in biomedical research

Graham SS, Harrison KR, Edward JC, Majdik ZP, Barbour JB, Rousseau JF 2024 Sep World Medical and Health Policy 16 489-505

Patient Characteristics, Management, and Outcomes in a Novel Cohort of Primary Hyperparathyroidism

Sant VR, Elnakieb Y, Lehmann C, Rousseau JF, Maalouf NM 2024 Aug Journal of the Endocrine Society 8

Comparing diagnostic criteria for posttraumatic stress disorder in a diverse sample of trauma-exposed youth

Dodd CG, Kirk CL, Rathouz PJ, Custer J, Garrett AS, Taylor L, Rousseau JF, Claasen C, Morgan MM, Newport DJ, Wagner KD, Nemeroff CB 2024 Aug Journal of Traumatic Stress 37 606-616

The role of resilience in the development of depression, anxiety, and post-traumatic stress disorder after trauma in children and adolescents

Srivastava AV, Brown R, Newport DJ, Rousseau JF, Wagner KD, Guzick A, Devargas C, Claassen C, Ugalde IT, Garrett A, Gushanas K, Liberzon I, Cisler JM, Nemeroff CB 2024 Apr Psychiatry research 334

Comparative effectiveness of dexamethasone in treatment of hospitalized COVID-19 patients in the United States during the first year of the pandemic: Findings from the National COVID Cohort Collaborative (N3C) data repository

Zhou R, Johnson KE, Rousseau JF, Rathouz PJ, Wilcox AB, Lee AM, Graves A, Anzalone A, Manna A, Saha A, Olex A, Zhou A, Williams AE, Southerland A, Girvin AT, Walden A, Sharathkumar AA, Amor B, Bates B, Hendricks B, Patel B, Alexander C, Bramante C, Ward-Caviness C, Madlock-Brown C, Suver C, Chute C, Dillon C, Wu C, Schmitt C, Takemoto C, Housman D, Gabriel D, Eichmann DA, Mazzotti D, Brown D, Boudreau E, Hill E, Zampino E, Carlson Marti E, Pfaff ER, French E, Koraishy FM, Mariona F, Prior F, Sokos G, Martin G, Lehmann H, Spratt H, Mehta H, Liu H, Sidky H, Hayanga JW, Pincavitch J, Clark J, Harper JR, Islam J, Ge J, Gagnier J, Saltz JH, Saltz J, Loomba J, Buse J, Mathew J, Rutter JL, McMurry JA, Guinney J, Starren J, Crowley K, Bradwell KR, Walters KM, Wilkins K, Gersing KR, Cato KD, Murray K, Kostka K, Northington L, Pyles LA, Misquitta L, Cottrell L, Portilla L, Deacy M, Bissell MM, Clark M, Emmett M, Saltz MM, Palchuk MB, Haendel MA, Adams M, Temple-O'Connor M, Kurilla MG, Morris M, Qureshi N, Safdar N, Garbarini N, Sharafeldin N, Sadan O, Francis PA, Burgoon PW, Robinson P, Payne PR, Fuentes R, Jawa R, Erwin-Cohen R, Patel R, Moffitt RA, Zhu RL, Kamaleswaran R, Hurley R, Miller RT, Pyarajan S, Michael SG, Bozzette S, Mallipattu S, Vedula S, Chapman S, O'Neil ST, Setoguchi S, Hong SS, Johnson S, Bennett TD, Callahan T, Topaloglu U, Sheikh U, Gordon V, Subbian V, Kibbe WA, Hernandez W, Beasley W, Cooper W, Hillegass W, Tanner Zhang X 2024 Mar PloS one 19

The risk and burden of thromboembolic and hemorrhagic events in patients with malignant gliomas receiving bevacizumab

Dasgupta P, Ou A, Lin H, Gregory T, Alfaro-Munoz KD, Yuan Y, Afshar-Khargan V, Kamiya-Matsuoka C, Rousseau JF, Majd NK 2024 Mar Journal of Neuro-Oncology 167 181-188

Clinical and molecular determinants of bleeding-related adverse outcomes in high-grade glioma

Dasgupta P, Rousseau JF 2024 Feb Journal of Neuro-Oncology 166 569-574

Evaluating traumatic event scoring schemas for their predictive value to concurrent diagnostic profiles: Texas Childhood Trauma Research Network

Aksan N, Guzick AG, Taylor L, Richmond R, Liberzon I, Cross J, Garza C, Rousseau J, Shahidullah JD, Clark SL, Rathouz PJ, Dodd CG, Cisler J, Newport DJ, Wagner KD, Nemeroff CB 2024 Jan Journal of affective disorders 345 94-102

Features of acute COVID-19 associated with post-acute sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study

Author Collaboration IN, Author Collaboration IS, Author Collaboration C&, Author Collaboration ID, Author Collaboration IS, Author Collaboration IC, Author Collaboration IC, Ozonoff A, Jayavelu ND, Liu S, Melamed E, Milliren CE, Qi J, Geng LN, McComsey GA, Cairns CB, Baden LR, Schaenman J, Shaw AC, Samaha H, Seyfert-Margolis V, Krammer F, Rosen LB, Steen H, Syphurs C, Dandekar R, Shannon CP, Sekaly RP, Ehrlich LI, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Sesma AF, Simon V, van Bakel H, Kim-Schulze S, Hafler DA, Levy O, Kraft M, Bime C, Haddad EK, Calfee CS, Erle DJ, Langelier CR, Eckalbar W, Bosinger SE, Peters B, Kleinstein SH, Rousseau JF 2024 Jan Nature communications 15

Evaluating large language models on medical evidence summarization

Tang L, Sun Z, Idnay B, Nestor JG, Soroush A, Elias PA, Xu Z, Ding Y, Durrett G, Rousseau JF, Weng C, Peng Y 2023 Dec npj Digital Medicine 6

Characterizing patterns of substance use in trauma exposed youth

Clark SL, Dodd CG, Taylor L, Stewart S, Yang N, Shahidullah JD, Guzick AG, Richmond R, Aksan N, Rathouz PJ, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB 2023 Nov Journal of Psychiatric Research 167 1-9

Relationship of Heterologous Virus Responses and Outcomes in Hospitalized COVID-19 Patients

Author Collaboration IN, Rosenberg-Hasson Y, Holmes TH, Diray-Arce J, Chen J, Kellogg R, Snyder M, Becker PM, Ozonoff A, Rouphael N, Reed EF, Maecker HT, Al Ozonoff O, Diray-Arce J, Milliren CE, McEnaney K, Barton B, Lentucci C, Saluvan M, Chang AC, Hoch A, Albert M, Shaheen T, Kho AT, Liu S, Thomas S, Chen J, Murphy MD, Cooney M, Syphurs C, Hayati AN, Bryant R, Abraham J, Schaenman J, Reed EF, Salehi-Rad R, Elashoff D, Brook J, Ramires-Sanchez E, Llamas M, Rivera A, Perdomo C, Ward DC, Magyar CE, Fulcher J, Pickering HC, Sen S, Jayavelu ND, Altman MC, Presnell S, Rousseau J 2023 Oct Journal of Immunology 211 1224-1231

AI-generated text may have a role in evidence-based medicine

Peng Y, Rousseau JF, Shortliffe EH, Weng C 2023 Jul Nature medicine 29 1593-1594

Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients

Author Collaboration IN, Diray-Arce J, Fourati S, Doni Jayavelu N, Patel R, Maguire C, Chang AC, Dandekar R, Qi J, Lee BH, van Zalm P, Schroeder A, Chen E, Konstorum A, Brito A, Gygi JP, Kho A, Chen J, Pawar S, Gonzalez-Reiche AS, Hoch A, Milliren CE, Overton JA, Westendorf K, Abraham J, Adkisson M, Albert M, Altamirano Torres L, Alvarenga B, Anderson ML, Anderson EJ, Arnett A, Asashima H, Atkinson MA, Baden LR, Barton B, Beach K, Beagle E, Becker PM, Bell MR, Bernui M, Bime C, Boddapati Kumar A, Booth LJ, Borresen B, Brakenridge SC, Bristow L, Bryant R, Calfee CS, Carreño Manuel J, Rousseau JF 2023 Jun Cell Reports Medicine 4

Designing an interprofessional dementia specialty clinic: Conceptualization and evaluation of a patient-centered model

Aguirre A, Hilsabeck RC, O’Mahar K, Carberry KE, Ayers G, Bertelson J, Rousseau JF, Paydarfar D 2023 Journal of Interprofessional Care 37 254-261

Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses

Tang L, Peng Y, Wang Y, Ding Y, Durrett G, Rousseau JF 2023 12532-12555

Attend Who is Weak: Pruning-assisted Medical Image Localization under Sophisticated and Implicit Imbalances

Jaiswal A, Chen T, Rousseau JF, Peng Y, Ding Y, Wang Z 2023 4976-4985

Understanding Factual Errors in Summarization: Errors, Summarizers, Datasets, Error Detectors

Tang L, Goyal T, Fabbri AR, Laban P, Xu J, Yavuz S, Kryściński W, Rousseau JF, Durrett G 2023 11626-11644

A Content Analysis of Self-Reported Financial Relationships in Biomedical Research

Graham SS, Sharma N, Karnes MS, Majdik ZP, Barbour JB, Rousseau JF 2023 AJOB Empirical Bioethics 14 91-98

Methods for development and application of data standards in an ontology-driven information model for measuring, managing, and computing social determinants of health for individuals, households, and communities evaluated through an example of asthma

Rousseau JF, Oliveira E, Tierney WM, Khurshid A 2022 Dec Journal of Biomedical Informatics 136

Trends in Oral Anticoagulant Use Among 436 864 Patients With Atrial Fibrillation in Community Practice, 2011 to 2020

Navar AM, Kolkailah AA, Overton R, Shah NP, Rousseau JF, Flaker GC, Pignone MP, Peterson ED 2022 Nov Journal of the American Heart Association 11

Analytics to monitor local impact of the Protecting Access to Medicare Act's imaging clinical decision support requirements

Valtchinov VI, Murphy SN, Lacson R, Ikonomov N, Zhai BK, Andriole K, Rousseau J, Hanson D, Kohane IS, Khorasani R 2022 Nov Journal of the American Medical Informatics Association 29 1870-1878

Real-world opioid use among patients with migraine enrolled in US commercial insurance and risk factors associated with migraine progression

Shao Q, Rascati KL, Lawson KA, Barner JC, Sonawane KB, Rousseau JF 2022 Nov Journal of Managed Care and Specialty Pharmacy 28 1272-1281

Evidence for stratified conflicts of interest policies in research contexts: a methodological review

Graham SS, Karnes MS, Jensen JT, Sharma N, Barbour JB, Majdik ZP, Rousseau JF 2022 Sep BMJ Open 12

Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: Results from the IMPACC study

Author Collaboration tI, Ozonoff A, Schaenman J, Jayavelu ND, Milliren CE, Calfee CS, Cairns CB, Kraft M, Baden LR, Shaw AC, Krammer F, van Bakel H, Esserman DA, Liu S, Sesma AF, Simon V, Hafler DA, Montgomery RR, Kleinstein SH, Levy O, Bime C, Haddad EK, Erle DJ, Pulendran B, Nadeau KC, Davis MM, Hough CL, Messer WB, Higuita NI, Metcalf JP, Atkinson MA, Brakenridge SC, Corry D, Kheradmand F, Ehrlich LI, Melamed E, McComsey GA, Sekaly R, Diray-Arce J, Peters B, Augustine AD, Reed EF, Altman MC, Becker PM, Rouphael N, Bime C, McEnaney K, Barton B, Lentucci C, Saluvan M, Rousseau JF 2022 Sep EBioMedicine 83

Trustworthy assertion classification through prompting

Wang S, Tang L, Majety A, Rousseau JF, Shih G, Ding Y, Peng Y 2022 Aug Journal of Biomedical Informatics 132

Associations Between Aggregate NLP-Extracted Conflicts of Interest and Adverse Events by Drug Product

Graham SS, Majdik ZP, Barbour JB, Rousseau JF 2022 Jun 405-409

Healthcare utilization and costs among patients with chronic migraine, episodic migraine, and tension-type headache enrolled in commercial insurance plans

Shao Q, Rascati KL, Barner JC, Lawson KA, Sonawane KB, Rousseau JF 2022 Feb Headache 62 141-158

Old can be Gold: Better Gradient Flow can Make Vanilla-GCNs Great Again

Jaiswal A, Wang P, Chen T, Rousseau JF, Ding Y, Wang Z 2022

EchoGen: A New Benchmark Study on Generating Conclusions from Echocardiogram Notes

Tang L, Kooragayalu S, Wang Y, Ding Y, Durrett G, Rousseau JF, Peng Y 2022 359-368

RoS-KD: A Robust Stochastic Knowledge Distillation Approach for Noisy Medical Imaging

Jaiswal A, Ashutosh K, Rousseau JF, Peng Y, Wang Z, Ding Y 2022 981-986

A dashboard for exploring clinical trials sponsorship and potential virtual monopolies

Graham SS, Majdik ZP, Barbour JB, Rousseau JF 2021 Oct JAMIA Open 4

Letter to the editor in response to "risk prediction of delirium in hospitalized patients using machine learning: An implementation and prospective evaluation study"

Rousseau JF, Tierney WM 2021 Mar Journal of the American Medical Informatics Association 28 664-665

RadBERT-CL: Factually-Aware Contrastive Learning For Radiology Report Classification

Jaiswal A, Tang L, Ghosh M, Rousseau JF, Peng Y, Ding Y 2021 Proceedings of Machine Learning Research 158 196-206

SCALP - Supervised Contrastive Learning for Cardiopulmonary Disease Classification and Localization in Chest X-rays using Patient Metadata

Jaiswal A, Li T, Zander C, Han Y, Rousseau JF, Peng Y, Ding Y 2021 1132-1137

Building a PubMed knowledge graph

Xu J, Kim S, Song M, Jeong M, Kim D, Kang J, Rousseau JF, Li X, Xu W, Torvik VI, Bu Y, Chen C, Ebeid IA, Li D, Ding Y 2020 Dec Scientific Data 7

Can emergency department provider notes help to achieve more dynamic clinical decision support?

Rousseau JF, Ip IK, Raja AS, Schuur JD, Khorasani R 2020 Dec JACEP Open 1 1269-1277

Understanding drug repurposing from the perspective of biomedical entities and their evolution: Bibliographic research using aspirin

Li X, Rousseau JF, Ding Y, Song M, Lu W 2020 Jun JMIR Medical Informatics 8

Heterogeneous Graph Embeddings of Electronic Health Records Improve Critical Care Disease Predictions

Wanyan T, Kang M, Badgeley MA, Johnson KW, De Freitas JK, Chaudhry FF, Vaid A, Zhao S, Miotto R, Nadkarni GN, Wang F, Rousseau J, Azad A, Ding Y, Glicksberg BS 2020 14-25

Can Automated Retrieval of Data from Emergency Department Physician Notes Enhance the Imaging Order Entry Process?

Rousseau JF, Ip IK, Raja AS, Valtchinov VI, Cochon L, Schuur JD, Khorasani R 2019 Applied Clinical Informatics 10 189-198

Measuring and Managing Population Health

Tierney WM, Rousseau JF, Khurshid A 2018 Feb Texas medicine 114 42-51

In Reply to “Erroneous Methodology in ‘Craniotomy Versus Craniectomy for Acute Traumatic Subdural Hematoma in the United States: A National Retrospective Cohort Analysis’”

Rush B, Rousseau J, Sekhon M, Griesdale DE 2016 Jul World neurosurgery 91 652

Pulling it all together: Envisioning a data-driven, ideal care system

Stone D, Rousseau J, Lai Y 2016 Jan 27-42

Craniotomy Versus Craniectomy for Acute Traumatic Subdural Hematoma in the United States: A National Retrospective Cohort Analysis

Rush B, Rousseau J, Sekhon MS, Griesdale DE 2016 World neurosurgery 88 25-31

Prosodic stress: Acoustic, aphasic, aprosodic and neuroanatomic interactions

Ross ED, Shayya L, Rousseau JF 2013 Sep Journal of Neurolinguistics 26 526-551